Pre_GI Gene

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Host: NC_008271 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008271:140846 Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
140846141817972ATP-dependent DNA ligaseQuickGO ontologyBLASTP
141954142883930hypothetical protein
143123143827705hypothetical protein
143848144237390hypothetical protein
1444271461631737type I restriction-modification system methyltransferase subunitQuickGO ontologyBLASTP
1461601473351176type I restriction-modification system specificity subunitQuickGO ontologyBLASTP
1473221504473126type I site-specific modification system restriction subunitQuickGO ontologyBLASTP
1506621521281467hypothetical proteinBLASTP
152455152739285probable transposaseQuickGO ontologyBLASTP
152736153398663possible transposase N-terminalQuickGO ontologyBLASTP
153409153600192possible transposase C-terminalQuickGO ontologyBLASTP
153884154210327possible transcriptional regulator WhiB familyQuickGO ontologyBLASTP
1542391557951557probable AMP-binding acyl-CoA synthetaseQuickGO ontologyBLASTP
155823156128306hypothetical protein
156125157024900hypothetical proteinBLASTP
1572621581679063-oxoacyl-acyl-carrier-protein reductaseQuickGO ontologyBLASTP
158367159227861hypothetical protein
159267160157891possible hybride transferase F420-dependent dehydrogenaseQuickGO ontologyBLASTP
1602831614161134possible hydrolaseQuickGO ontologyBLASTP
1615081625211014probable glucose-6-phosphate 1-dehydrogenaseQuickGO ontologyBLASTP
1625501642021653glucose-6-phosphate isomeraseQuickGO ontologyBLASTP
1646901665461857probable acid-CoA ligaseQuickGO ontologyBLASTP