Pre_GI: BLASTN Hits

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Query: NC_008271:140846 Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence

Start: 140846, End: 166546, Length: 25701

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012522:2031786*2031786206157229787Rhodococcus opacus B4, complete genome1e-125458BLASTN svgBLASTP svg
NC_008271:11995711995713933819382Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence4e-104387BLASTN svgBLASTP svg
NC_008268:2313583*2313583234448830906Rhodococcus sp. RHA1, complete genome4e-95357BLASTN svgBLASTP svg
NC_008268:34180003418000344059922600Rhodococcus sp. RHA1, complete genome3e-80307BLASTN svgBLASTP svg
NC_008271:35909359096246126553Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence4e-61244BLASTN svgBLASTP svg
NC_015434:4640769*4640769466756226794Verrucosispora maris AB-18-032 chromosome, complete genome9e-56226BLASTN svgBLASTP svg
NC_015953:47469834746983477386726885Streptomyces sp. SirexAA-E chromosome, complete genome9e-56226BLASTN svgBLASTP svg
NC_012522:78711737871173789754126369Rhodococcus opacus B4, complete genome6e-29137BLASTN svgBLASTP svg
NC_012522:78370717837071785964122571Rhodococcus opacus B4, complete genome2e-26129BLASTN svgBLASTP svg
NC_015576:14427131442713147609933387Mycobacterium sp. JDM601 chromosome, complete genome6e-26127BLASTN svgBLASTP svg
NC_008596:13020001302000135784455845Mycobacterium smegmatis str. MC2 155, complete genome2e-22115BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome2e-22115BLASTN svgBLASTP svg
NC_009664:4696961*4696961475841661456Kineococcus radiotolerans SRS30216, complete genome2e-22115BLASTN svgBLASTP svg
NC_009077:2308634*2308634235649847865Mycobacterium sp. JLS, complete genome9e-22113BLASTN svgBLASTP svg
NC_012669:17006261700626173294232317Beutenbergia cavernae DSM 12333, complete genome9e-19103BLASTN svgBLASTP svg
NC_008789:1237969*1237969126209924131Halorhodospira halophila SL1, complete genome4e-18101BLASTN svgBLASTP svg
NC_010612:83564883564886299927352Mycobacterium marinum M, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_015563:4911188*4911188493357422387Delftia sp. Cs1-4 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_015434:666692*66669270459937908Verrucosispora maris AB-18-032 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015434:24600532460053249159931547Verrucosispora maris AB-18-032 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_011901:62571262571266531339602Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete3e-1591.7BLASTN svgBLASTP svg
NC_002677:332923*33292335401721095Mycobacterium leprae TN, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_011896:332939*33293935403321095Mycobacterium leprae Br4923, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013169:1410384*1410384143716826785Kytococcus sedentarius DSM 20547, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_018681:867230*86723090173034501Nocardia brasiliensis ATCC 700358 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014973:34521003452100349125939160Geobacter sp. M18 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_003919:33961363396136342036024225Xanthomonas axonopodis pv. citri str. 306, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_011881:111759917599Arthrobacter chlorophenolicus A6 plasmid pACHL02, complete1e-1179.8BLASTN svgBLASTP svg
NC_008269:42889842889845259923702Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_013169:19414101941410196745126042Kytococcus sedentarius DSM 20547, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013169:24238632423863245464230780Kytococcus sedentarius DSM 20547, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015663:2090442*2090442212127330832Enterobacter aerogenes KCTC 2190 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008702:111506115061Azoarcus sp. BH72, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009049:1934398*1934398196979735400Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_014008:1463795*1463795148708323289Coraliomargarita akajimensis DSM 45221 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015514:3877810*3877810390211124302Cellulomonas fimi ATCC 484 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_000962:47581647581649961923804Mycobacterium tuberculosis H37Rv, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_002755:47287247287249645723586Mycobacterium tuberculosis CDC1551, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_002945:47683547683550063823804Mycobacterium bovis AF2122/97, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008769:50700050700053043423435Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009525:47709347709350092923837Mycobacterium tuberculosis H37Ra, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009565:47950047950050278923290Mycobacterium tuberculosis F11, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_012207:47750047750050076723268Mycobacterium bovis BCG str. Tokyo 172, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015389:809474*80947485204242569Coriobacterium glomerans PW2 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_019950:48188148188150600724127Mycobacterium canettii CIPT 140060008 complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015848:48350048350050998826489Mycobacterium canettii CIPT 140010059, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015671:557720*55772057761419895Cellvibrio gilvus ATCC 13127 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015671:25580825580830092445117Cellvibrio gilvus ATCC 13127 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015671:13989213989216047420583Cellvibrio gilvus ATCC 13127 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004369:41236*412366188820653Corynebacterium efficiens YS-314, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014098:3008951*3008951303027321323Bacillus tusciae DSM 2912 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013169:1845735*1845735186893023196Kytococcus sedentarius DSM 20547, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006350:1084930*1084930112191036981Burkholderia pseudomallei K96243 chromosome 1, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_008752:10259801025980106353637557Acidovorax avenae subsp. citrulli AAC00-1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013174:373726*37372639441720692Jonesia denitrificans DSM 20603, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009348:22475002247500227757630077Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009434:28147428147430109919626Pseudomonas stutzeri A1501, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012856:112296322963Ralstonia pickettii 12D chromosome 1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013235:2257899*2257899229859940701Nakamurella multipartita DSM 44233, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013235:31293843129384315062521242Nakamurella multipartita DSM 44233, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013235:49387984938798496312324326Nakamurella multipartita DSM 44233, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013235:68290268290270766324762Nakamurella multipartita DSM 44233, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014814:38920003892000392242630427Mycobacterium sp. Spyr1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014814:4809607*4809607483377924173Mycobacterium sp. Spyr1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015422:21266142126614214813621523Alicycliphilus denitrificans K601 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015671:2371632*2371632239461522984Cellvibrio gilvus ATCC 13127 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015671:3470903*3470903349501524113Cellvibrio gilvus ATCC 13127 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005773:106000*10600015088044881Pseudomonas syringae pv. phaseolicola 1448A, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_008146:33494153349415338101531601Mycobacterium sp. MCS, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_008705:33776973377697340929731601Mycobacterium sp. KMS, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009077:33232913323291335489131601Mycobacterium sp. JLS, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013172:606387*60638762543019044Brachybacterium faecium DSM 4810, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_014151:40213944021394406852347130Cellulomonas flavigena DSM 20109 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013862:27991279915399926009Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_007484:3035068*3035068305935824291Nitrosococcus oceani ATCC 19707, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004757:24519192451919247341121493Nitrosomonas europaea ATCC 19718, complete genome3e-0661.9BLASTN svgBLASTP svg