Pre_GI Gene

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Host: NC_008262 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008262:2025699 Clostridium perfringens SM101, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
202569920267961098GTP-binding protein YchFQuickGO ontologyBLASTP
20269552027752798polysaccharide deacetylase nodulation protein NodBQuickGO ontologyBLASTP
20279342028569636methenyltetrahydrofolate cyclohydrolaseQuickGO ontologyBLASTP
202859820298841287hypothetical proteinBLASTP
20298842030600717teichoic acid biosynthesis protein AQuickGO ontologyBLASTP
203061620317131098TPR domain proteinQuickGO ontologyBLASTP
203200520337321728phosphomannomutaseQuickGO ontologyBLASTP
20339232034669747hyaluronoglucosaminidase domain proteinQuickGO ontologyBLASTP
203505720373092253FucAQuickGO ontologyBLASTP
203755820385801023hydroxyacid oxidase 2QuickGO ontologyBLASTP
20385942039037444hypothetical proteinBLASTP
203927420414572184stage V sporulation protein D spoVD FtsIpbp familyQuickGO ontologyBLASTP
204172120440812361MutS2 family proteinQuickGO ontologyBLASTP