Pre_GI Gene

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Host: NC_008148 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008148:583030 Rubrobacter xylanophilus DSM 9941, complete genome

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
582098583033936hypothetical proteinBLASTP
583030583788759GntR-like proteinQuickGO ontologyBLASTP
583889584287399hypothetical protein
584262584525264hypothetical protein
584552584809258hypothetical protein
585027585626600hypothetical protein
5857425876851944O-antigen polymeraseQuickGO ontology
5878275893051479Protein-tyrosine kinaseQuickGO ontologyBLASTP
5895755909451371polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
590942591901960hypothetical proteinBLASTP
591962592810849glycosyl transferase family 2QuickGO ontologyBLASTP
592846593838993glycosyl transferase family 2QuickGO ontologyBLASTP
594291595172882hypothetical protein
5952135962981086glycosyl transferase group 1QuickGO ontologyBLASTP
5962955972991005GDP-mannose 46-dehydrataseQuickGO ontologyBLASTP
597300598247948NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
5982445993981155BLASTP
599377599514138
5997446012041461Undecaprenyl-phosphate galactosephosphotransferaseQuickGO ontologyBLASTP
601474601803330hypothetical protein
601974602795822transposase IS4QuickGO ontologyBLASTP
603080603967888transcriptional regulator RpiR familyQuickGO ontologyBLASTP
6040206054591440Nasolute symporterQuickGO ontologyBLASTP
6054846070131530histidine ammonia-lyaseQuickGO ontologyBLASTP
6072316082351005ABC transporter relatedQuickGO ontologyBLASTP
608239608946708binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
608947609600654binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP