Pre_GI Gene

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Host: NC_008146 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008146:2744612 Mycobacterium sp. MCS, complete genome

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium MCS was isolated from soil in a wood preservative-contaminated land-treatment unit where remediation of polycyclic aromatic hydrocarbon (PAH) was occurring. This isolate mineralizes small- and large-ring PAHs, in contrast to other PAH-degrading microbes. Bioremediation of PAHs offers an attractive solution to pollution clean-up because it can occur on site and at relative little cost compared to alternatives. This isolate belongs to a fast-growing group of the mycobacterium genus that is defined as Gram-positive, acid-fast, pleomorphic, non-motile rods. Bioremediation of soils contaminated with wood preservatives containing polycyclic aromatic hydrocarbons (PAHs) is desired because of their toxic, mutagenic, and carcinogenic properties. Creosote wood preservative–contaminated soils at the Champion International Superfund Site in Libby, Montana currently undergo bioremediation in a prepared-bed land treatment unit (LTU) process.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
27446122745238627Uncharacterised peroxidase-relatedQuickGO ontologyBLASTP
274524327461398976-phosphogluconate dehydrogenase NAD-binding proteinQuickGO ontologyBLASTP
27461482746348201Carboxymuconolactone decarboxylaseQuickGO ontologyBLASTP
27464182746540123hypothetical protein
27466702747638969putative integral membrane proteinQuickGO ontologyBLASTP
27479342748164231hypothetical proteinBLASTP
274838727496881302Tryptophan synthase beta chain-like proteinQuickGO ontologyBLASTP
27497502750289540hypothetical proteinBLASTP
27507832751127345transposase IS3IS911QuickGO ontologyBLASTP
27512052752044840Integrase catalytic regionQuickGO ontologyBLASTP
275232527533621038Integrase catalytic regionQuickGO ontologyBLASTP
275353527561982664hypothetical proteinBLASTP
27567452756984240hypothetical proteinBLASTP
275706027585171458hypothetical proteinBLASTP
27584952758860366hypothetical proteinBLASTP
275885327599741122phage integraseQuickGO ontologyBLASTP
27604552760712258hypothetical proteinBLASTP
27609692761520552YaeQQuickGO ontologyBLASTP
27617322761941210hypothetical protein
27623752762824450hypothetical proteinBLASTP
276330027644781179Acyl-CoA dehydrogenase type 2-like proteinQuickGO ontologyBLASTP
27644812765446966fumarylacetoacetate FAA hydrolaseQuickGO ontologyBLASTP
276545227673681917AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
27673252767771447Phenylacetic acid degradation-related proteinQuickGO ontologyBLASTP
27678642768712849transcriptional regulator LysR familyQuickGO ontologyBLASTP
27688042769427624transcriptional regulator TetR familyQuickGO ontologyBLASTP
27694472769623177putative 34-dihydroxyphenylacetate 23-dioxygenaseQuickGO ontologyBLASTP
2769633277050287034-dihydroxyphenylacetate 23-dioxygenase HpaDQuickGO ontologyBLASTP
2770536277203815035-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseQuickGO ontologyBLASTP
27720352772985951dihydrodipicolinate synthaseQuickGO ontologyBLASTP
2772982277451115305-carboxymethyl-2-hydroxymuconate delta-isomeraseQuickGO ontologyBLASTP