Pre_GI Gene

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Host: NC_006512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006512:551312 Idiomarina loihiensis L2TR, complete genome

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5499905513151326NADH dehydrogenase subunit LQuickGO ontologyBLASTP
5513125535852274hypothetical proteinBLASTP
553582553779198hypothetical protein
553919554188270Transcriptional regulator CroCIxre familyQuickGO ontologyBLASTP
554181554387207
5546145558581245Predicted ATPase AAA superfamilyQuickGO ontologyBLASTP
5558625572531392Predicted exonuclease of the beta-lactamase foldQuickGO ontologyBLASTP
557286558110825hypothetical proteinBLASTP
558131558316186hypothetical protein
5586425601291488Uncharacterized protein containing Fic domainQuickGO ontologyBLASTP
5604675629322466Predicted membrane associated GTPaseQuickGO ontologyBLASTP
5629295645961668Protein containing N-terminal predicted GTPase domainQuickGO ontologyBLASTP
5646615659411281Predicted C-terminal GTPase domain fused to uncharaterized conserved domainQuickGO ontologyBLASTP
5661565677691614Possible regulatory protein containing AAA-type ATPase domainQuickGO ontologyBLASTP
5680495692151167UDP-glucose 6-dehydrogenaseQuickGO ontologyBLASTP
5692315702411011Chain length determinant proteinQuickGO ontologyBLASTP
5703065721021797ABC-type multidrug transport system ATPase and permease componentsQuickGO ontologyBLASTP
5721205731781059DTDP-D-glucose 46-dehydrataseQuickGO ontologyBLASTP
573175574053879DTDP-glucose pyrophosphorylaseQuickGO ontologyBLASTP
574314574871558Acetyltransferase isoleucine patch superfamilyQuickGO ontologyBLASTP
5748815756067263-oxoacyl-acyl carrier protein reductase putativeQuickGO ontologyBLASTP
5756335767751143Predicted pyridoxal phosphate-dependent enzymeQuickGO ontologyBLASTP
5767685779041137hypothetical proteinBLASTP
577888578409522Acetyltransferase isoleucine patch superfamilyQuickGO ontologyBLASTP
5784225796121191Predicted nucleoside-diphosphate sugar epimeraseQuickGO ontologyBLASTP
5796255807671143Predicted pyridoxal phosphate-dependent enzymeQuickGO ontologyBLASTP
5807785819411164UDP-N-acetylglucosamine 2-epimeraseQuickGO ontologyBLASTP
5819475830201074Sialic acid synthaseQuickGO ontologyBLASTP
583013583654642Acetyltransferase isoleucine patch superfamilyQuickGO ontologyBLASTP