Pre_GI Gene

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Host: NC_004741 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004741:2081649 Shigella flexneri 2a str. 2457T, complete genome

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
208034820816521305histidinol dehydrogenaseQuickGO ontologyBLASTP
208164920827191071histidinol-phosphate aminotransferaseQuickGO ontologyBLASTP
208271920837861068imidazole glycerol-phosphate dehydratasehistidinol phosphataseQuickGO ontologyBLASTP
20837862084376591imidazole glycerol phosphate synthase subunit HisHQuickGO ontologyBLASTP
208437620851137381-5-phosphoribosyl-5-5- phosphoribosylaminomethylideneamino imidazole-4-carboxamide isomeraseQuickGO ontologyBLASTP
20850952085871777imidazole glycerol phosphate synthase subunit HisFQuickGO ontologyBLASTP
20858652086476612bifunctional phosphoribosyl-AMP cyclohydrolasephosphoribosyl-ATP pyrophosphatase proteinQuickGO ontologyBLASTP
208666220876751014regulator of length of O-antigen component of lipopolysaccharide chainsQuickGO ontologyBLASTP
208778520889051121BLASTP
2089155209056114076-phosphogluconate dehydrogenaseQuickGO ontologyBLASTP
20906702091029360hypothetical proteinBLASTP
20910262091577552hypothetical proteinBLASTP
20916782092277600hypothetical proteinBLASTP
20924482092939492hypothetical proteinBLASTP
20929972093386390glycosyl transferaseQuickGO ontologyBLASTP
20934492093823375glycosyl translocaseQuickGO ontologyBLASTP
209382720949751149O-antigen polymeraseQuickGO ontologyBLASTP
20949952095864870dTDP-rhamnosyl transferaseQuickGO ontologyBLASTP
20958932096783891dTDP-rhamnosyl transferaseQuickGO ontologyBLASTP
209681320980691257polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
20980852098630546dTDP-6-deoxy-L-mannose-dehydrogenaseQuickGO ontologyBLASTP
20986342099512879glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
20995712100470900dTDP-6-deoxy-L-mannose-dehydrogenaseQuickGO ontologyBLASTP
210047021015551086dTDP-glucose 46 dehydrataseQuickGO ontologyBLASTP
21019282102821894UTP--glucose-1-P uridyltransferaseQuickGO ontologyBLASTP
210299621043901395hypothetical proteinBLASTP
210440121056211221putative colanic acid biosynthesis glycosyl transferaseQuickGO ontologyBLASTP
210561821068981281putative galactokinaseQuickGO ontologyBLASTP
210707821085561479probable export proteinQuickGO ontologyBLASTP
210855821099521395putative colanic acid biosynthsis UDP-glucose lipid carrier transferaseQuickGO ontologyBLASTP
211000721113771371phosphomannomutaseQuickGO ontologyBLASTP
211157021130061437mannose-1-phosphate guanyltransferaseQuickGO ontologyBLASTP