Pre_GI Gene

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Host: NC_004605 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004605:1385444 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
13845251385472948putative adhesion proteinQuickGO ontologyBLASTP
138544413865861143hypothetical proteinBLASTP
13868701387448579hypothetical proteinBLASTP
13885361388667132hypothetical protein
1389816138991196hypothetical proteinBLASTP
13909671391491525hypothetical protein
1391671139176090hypothetical protein
13919601392529570thermostable direct hemolysin AQuickGO ontologyBLASTP
13927151392915201hypothetical proteinBLASTP
13930811393929849transposaseQuickGO ontologyBLASTP
13944031394555153hypothetical protein
13946331395094462hypothetical protein
13953251395696372hypothetical protein
13956731396605933IS1655 transposaseQuickGO ontologyBLASTP
139681913979251107cytotoxic necrotizing factorQuickGO ontologyBLASTP
13979901398286297putative zinc finger proteinQuickGO ontologyBLASTP
13984081398716309hypothetical proteinBLASTP
13990401399732693hypothetical proteinBLASTP
1401574140166390hypothetical protein
14018421402204363hypothetical protein
14025321403242711putative exoenzyme TQuickGO ontologyBLASTP
14035931404390798hypothetical proteinBLASTP
14048281405517690putative traA proteinQuickGO ontology
1405958140605396hypothetical proteinBLASTP
14061901406597408putative OspC2QuickGO ontologyBLASTP
14071551407916762putative transcriptional regulator ToxRQuickGO ontologyBLASTP
14079001408385486hypothetical protein
14083861408760375hypothetical proteinBLASTP
14087751409008234putative type III secretion apparatus proteinQuickGO ontology
14089951409747753hypothetical protein
14097341410009276hypothetical protein
141008914113511263putative ATPase YscNQuickGO ontologyBLASTP
141135114128141464putative type III secretion system EscC proteinQuickGO ontologyBLASTP
14128041413052249hypothetical protein
14130451413728684putative Spa29 component of the Mxi-Spa secretion machineryQuickGO ontology
14137311414462732putative Type III secretion protein Spa24QuickGO ontologyBLASTP
14144671414760294hypothetical protein
14147811414975195hypothetical protein
141529714164481152hypothetical proteinBLASTP
14165351417404870putative targeted effector protein YopPQuickGO ontologyBLASTP
14179361418040105hypothetical proteinBLASTP
14186771419228552putative transcriptional activator ToxRQuickGO ontologyBLASTP
14195131419728216putative Type III secretion protein Spa33QuickGO ontology
14197441420397654hypothetical protein
142040314214131011hypothetical protein
14213911421804414hypothetical protein
14217731422579807putative outer membrane proteinQuickGO ontologyBLASTP
142255414236121059putative type III secretion system EscU proteinQuickGO ontologyBLASTP
142363014255131884putative type III secretion system EscV proteinQuickGO ontologyBLASTP
14255101426121612hypothetical protein
142623414311024869hypothetical protein
14314001431972573putative dimethyladenosine transferaseQuickGO ontology
14319831432390408hypothetical protein
14323021432919618hypothetical protein
14329661433691726hypothetical protein
143370214347511050putative secreted protein EspDQuickGO ontology
14350921435382291putative chaperoneQuickGO ontologyBLASTP
14353941436125732hypothetical proteinBLASTP
14362671436755489putative two-component response regulatorQuickGO ontology
14367831437241459hypothetical protein
14372431437776534putative type III secretion system lipoprotein precursor EprKQuickGO ontology
14377781438035258hypothetical protein
14381821438790609hypothetical protein
14388751439177303hypothetical protein
143911814405721455hypothetical protein
14410961441206111hypothetical protein
144150314440912589hypothetical protein
14441981444308111hypothetical protein probable transposase partialQuickGO ontology
1444748144484396hypothetical protein
144499114494844494hypothetical proteinBLASTP
14495651449693129hypothetical protein
14508281451397570thermostable direct hemolysin SQuickGO ontologyBLASTP
14524571452705249transposaseQuickGO ontologyBLASTP
14530931453980888putative OspB proteinQuickGO ontologyBLASTP
14542581454380123hypothetical protein
14550481455434387putative integral membrane proteinQuickGO ontology
14554131455697285hypothetical protein
14557281456105378hypothetical protein
14560601456392333putative integral membrane proteinQuickGO ontology
1456439145653496hypothetical protein
145666714578661200hypothetical proteinBLASTP