Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:3207776 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
32073403207783444hypothetical proteinBLASTP
320777632120354260putative RHS proteinQuickGO ontologyBLASTP
32120383212454417hypothetical proteinBLASTP
32125303212853324hypothetical proteinBLASTP
321366132151151455putative flagellinQuickGO ontologyBLASTP
32152453215712468putative transcriptional regulatorQuickGO ontologyBLASTP
32163243217214891hypothetical proteinBLASTP
321720732205393333putative ATP-binding proteinQuickGO ontologyBLASTP
32205323221371840putative phage-related proteinQuickGO ontologyBLASTP
322152232233751854hypothetical proteinBLASTP
322337832257712394putative signal transduction proteinQuickGO ontologyBLASTP
322614332273961254integraseQuickGO ontologyBLASTP
3227600322768687tRNA-LeuQuickGO ontology
3227695322776874tRNA-CysQuickGO ontology
3227820322789576tRNA-GlyQuickGO ontology
32280353228583549CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseQuickGO ontologyBLASTP
322864232304741833excinuclease ABC subunit CQuickGO ontologyBLASTP
32304673231123657response regulatorQuickGO ontologyBLASTP
32317683231992225hypothetical proteinBLASTP
32320863232373288hypothetical protein
3232835323291076tRNA-LysQuickGO ontology
323324332346551413D-serineD-alanineglycine transporterQuickGO ontologyBLASTP
32348253235091267hypothetical proteinBLASTP
32350883235258171hypothetical protein
32354723235747276nitrogen assimilation regulatory protein partialQuickGO ontologyBLASTP
3236126323620176tRNA-AsnQuickGO ontologyBLASTP
323638132376671287integraseQuickGO ontologyBLASTP
32377013238219519hypothetical protein
32382803239092813hypothetical proteinBLASTP
32391333239936804hypothetical proteinBLASTP
32411303241531402DNA-binding protein HnsQuickGO ontologyBLASTP
32416583242011354putative plasmid-related proteinQuickGO ontologyBLASTP
32420113242289279hypothetical proteinBLASTP
32424923242674183hypothetical proteinBLASTP
32427083242992285hypothetical proteinBLASTP
324372232451251404putative plasmid mobilization proteinQuickGO ontologyBLASTP
32452083246110903hypothetical protein