Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:4093610 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
40929514093613663amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
40936104094251642amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
40942514095060810amino acid ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
409511840964251308aminopeptidase putativeQuickGO ontologyBLASTP
409655940985952037N-methylproline demethylase putativeQuickGO ontologyBLASTP
40987224099363642transcriptional regulator TetR familyQuickGO ontologyBLASTP
40996304100520891amidohydrolaseQuickGO ontologyBLASTP
410056841017971230major facilitator family transporterQuickGO ontologyBLASTP
410189641035061611transcriptional regulator GntR familyamidohydrolase family proteinQuickGO ontologyBLASTP
410361041067893180oxidoreductase FAD-binding putativeQuickGO ontologyBLASTP
41068394107744906transcriptional regulator LysR familyQuickGO ontologyBLASTP
4107954410802976tRNA-GlyQuickGO ontology
41080954108661567CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseQuickGO ontologyBLASTP
410868841105111824excinuclease ABC subunit CQuickGO ontologyBLASTP
41105134111154642response regulator GacAQuickGO ontologyBLASTP
41113024111682381transcriptional regulator CroCI familyQuickGO ontologyBLASTP
41117474111977231hypothetical proteinBLASTP
41120004112461462acetyltransferase GNAT familyQuickGO ontologyBLASTP
41124614113222762hydrolase carbon-nitrogen familyQuickGO ontologyBLASTP
4113856411494710923-deoxy-7-phosphoheptulonate synthaseQuickGO ontologyBLASTP
41151624115443282peptidyl-prolyl cis-trans isomerase CQuickGO ontologyBLASTP
411552441174581935peptide ABC transporter periplasmic peptide-binding proteinQuickGO ontologyBLASTP
411745841185221065peptide ABC transporter permease proteinQuickGO ontologyBLASTP
411852241195441023peptide ABC transporter permease proteinQuickGO ontologyBLASTP