Pre_GI: BLASTP Hits

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Query: NC_004129:4093610:4098722 Pseudomonas fluorescens Pf-5, complete genome

Start: 4098722, End: 4099363, Length: 642

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:5386489:541099754109975411644648Pseudomonas putida KT2440, complete genometranscriptional regulator, TetR family1e-103375
NC_003062:2506959:250921625092162509995780Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein3e-69261
NC_003304:2507000:250932925093292509949621Agrobacterium tumefaciens str. C58 chromosome circular, completetranscriptional regulator, TetR family2e-68258
NC_016625:171341:179483179483180133651Burkholderia sp. YI23 chromosome 2, complete sequenceTetR family transcriptional regulator2e-61234
NC_016625:171341:176556176556177182627Burkholderia sp. YI23 chromosome 2, complete sequenceTetR family transcriptional regulator1e-58226
NC_007802:1484641:149616814961681496782615Jannaschia sp. CCS1, complete genomeputative transcriptional regulator, TetR family6e-43173
NC_020911:1859210:187578418757841876398615Octadecabacter antarcticus 307, complete genomeputative HTH-type transcriptional regulatory protein2e-40165
NC_007802:1240989:125796812579681258576609Jannaschia sp. CCS1, complete genometranscriptional regulator, TetR family3e-23108
NC_012491:4231469:425141842514184251933516Brevibacillus brevis NBRC 100599, complete genomeprobable transcriptional regulator2e-1892.4
NC_010581:3387118:338925733892573389799543Beijerinckia indica subsp. indica ATCC 9039, complete genometranscriptional regulator, TetR family4e-1891.3
NC_016947:2210339:223468822346882235284597Mycobacterium intracellulare MOTT-02 chromosome, complete genomehypothetical protein7e-1373.9
NC_017082:6687020:668908066890806689628549Bradyrhizobium sp. S23321, complete genometranscriptional regulator3e-1272
NC_013757:1438812:147299414729941473593600Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family4e-1271.6
NC_016111:1546505:154996115499611550524564Streptomyces cattleya NRRL 8057, complete genomeTranscriptional regulator, TetR family5e-1270.9
NC_014622:653599:674359674359674868510Paenibacillus polymyxa SC2 chromosome, complete genometranscriptional regulator9e-0857
NC_011145:4365730:437137943713794372005627Anaeromyxobacter sp. K, complete genomeregulatory protein TetR1e-0653.1