Pre_GI Gene

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Host: NC_003911 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003911:4001094 Silicibacter pomeroyi DSS-3, complete genome

Host Lineage: Ruegeria pomeroyi; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Formerly Silicibacter pomeroyi, his marine bacterium is a member of the Roseobacter clade and was isolated off of the coast of Georgia in 1998. Dimethylsulfoniopropionate-degrading bacterium. Capable of degrading the organic sulfur compound DMSP (dimethylsulfoniopropionate) and can metabolize a number of sulfur compounds. DMSP is synthesized by marine algae and the degradation product dimethylsulfide contributes to the global sulfur cycle.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
400109440028271734acetoin catabolism regulatory proteinQuickGO ontologyBLASTP
400316840035003334-carboxymuconolactone decarboxylase domainalkylhydroperoxidase AhpD family core domain proteinQuickGO ontologyBLASTP
400356840046681101dihydrolipoamide acetyltransferaseQuickGO ontologyBLASTP
400467340056801008acetoin dehydrogenase complex E1 component beta subunitQuickGO ontologyBLASTP
40057114006691981acetoin dehydrogenase complex E1 component alpha subunitQuickGO ontologyBLASTP
400668840077461059acetoin catabolism protein XQuickGO ontologyBLASTP
40078994008051153hypothetical proteinBLASTP
400838740096701284RNA polymerase sigma-54 factorQuickGO ontologyBLASTP
4010290401036677tRNA-MetQuickGO ontology
401040940105261185S ribosomal RNAQuickGO ontologyBLASTP
40107304013624289523S ribosomal RNAQuickGO ontologyBLASTP
4014074401414976tRNA-AlaQuickGO ontologyBLASTP
4014223401429977tRNA-IleQuickGO ontology
40145154015969145516S ribosomal RNAQuickGO ontologyBLASTP
40167854017324540hypothetical proteinBLASTP
401729140183221032transcriptional regulator AraC familyQuickGO ontologyBLASTP
401843940202051767acyl-CoA dehydrogenase family proteinQuickGO ontologyBLASTP
40202654021068804enoyl-CoA hydrataseQuickGO ontologyBLASTP
40211344021610477SsrA-binding proteinQuickGO ontologyBLASTP
40217064022056351hypothetical proteinBLASTP
40220874022590504hypothetical protein
40225604023255696transcriptional regulator ArsR familyQuickGO ontologyBLASTP
402398340255001518phosphoglyceromutaseQuickGO ontologyBLASTP
402549740266331137hypothetical proteinBLASTP
402664040279711332carboxyl-terminal protease family proteinQuickGO ontologyBLASTP
40280654028457393hypothetical protein
40284544029215762hypothetical proteinBLASTP
402946340325823120ABC transporter permease proteinQuickGO ontologyBLASTP
40325724033465894CAAX amino terminal protease family proteinQuickGO ontology