Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003911: Silicibacter pomeroyi DSS-3, complete genome

NCBI: NC_003911

Host Lineage: Ruegeria pomeroyi; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Formerly Silicibacter pomeroyi, his marine bacterium is a member of the Roseobacter clade and was isolated off of the coast of Georgia in 1998. Dimethylsulfoniopropionate-degrading bacterium. Capable of degrading the organic sulfur compound DMSP (dimethylsulfoniopropionate) and can metabolize a number of sulfur compounds. DMSP is synthesized by marine algae and the degradation product dimethylsulfide contributes to the global sulfur cycle.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1253400*27913725738Island text2.4290929.560231.928Neighbours11BLASTN+253400.gbk
2480202*49877918578Island text1.6037222.566125.6974Neighbours11BLASTN+IslandViewer 480202.gbk
3633393*66026126869Island text1.6653426.852319.7473Neighbours11BLASTN+IslandViewer 633393.gbk
41078949*111287933931Island text1.985132.125725.5778Neighbours11BLASTN+IslandViewer 1078949.gbk
51265972*131998654015Island text2.7118936.270325.359Neighbours11BLASTN+IslandViewer 1265972.gbk
61749467*177014120675Island text1.5911825.571518.913Neighbours11BLASTN+IslandViewer 1749467.gbk
71791878*185265460777Island text1.9952332.805624.1449Neighbours11BLASTN+1791878.gbk
82042389*206571223324Island text1.7792327.331139.9419Neighbours11BLASTN+IslandViewer 2042389.gbk
92379254240057021317Island text1.6412430.931220.3975Neighbours11BLASTNIslandViewer 2379254.gbk
102540453256752127069Island text1.7089627.776926.013Neighbours11BLASTN+IslandViewer 2540453.gbk
112899435292004820614Island text1.5241526.453119.1132Neighbours11BLASTN+IslandViewer 2899435.gbk
123453764*347948625723Island text2.8580230.30831.5824Neighbours11BLASTN3453764.gbk
133864852*389829633445Island text1.8874329.70830.8925Neighbours11BLASTN+IslandViewer 3864852.gbk
144001094*403346532372Island text2.8326130.302231.9034Neighbours11BLASTN+4001094.gbk