Pre_GI Gene

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Host: NC_003888 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003888:7561923 Streptomyces coelicolor A3(2), complete genome

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
75619237562825903LysR-family transcriptional regulatorQuickGO ontologyBLASTP
75628727563450579DNA-binding proteinQuickGO ontologyBLASTP
75634477563992546acetyltransferaseQuickGO ontologyBLASTP
75639997564382384hypothetical proteinBLASTP
756453375658371305integral membrane efflux proteinQuickGO ontologyBLASTP
7565958756603174tRNA-ProQuickGO ontologyBLASTP
756613075673471218phage integraseQuickGO ontologyBLASTP
756825175700441794hypothetical proteinBLASTP
75706067570968363ArsR-family transcriptional regulatorQuickGO ontologyBLASTP
757110775723361230integral membrane transport proteinQuickGO ontologyBLASTP
75723437572801459hypothetical proteinBLASTP
757286975742631395secreted proteinQuickGO ontologyBLASTP
75744207574779360ArsR-family transcriptional regulatorQuickGO ontologyBLASTP
75748977575238342ArsR-family transcriptional regulatorQuickGO ontologyBLASTP
75753597576030672ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
757603675778471812ABC transporter permease proteinQuickGO ontologyBLASTP
75778517578723873ABC transporter binding lipoproteinQuickGO ontologyBLASTP
75790447579403360hypothetical protein
757940075809351536phosphoglyceromutaseQuickGO ontologyBLASTP
7580932758225413233-phosphoshikimate 1-carboxyvinyltransferaseQuickGO ontologyBLASTP
758230975846392331oxidoreductaseQuickGO ontologyBLASTP
75849427585664723hypothetical proteinBLASTP
758641075879751566integral membrane efflux proteinQuickGO ontologyBLASTP
75879937588445453ArsR-family transcriptional regulatorQuickGO ontologyBLASTP
758853275896351104phosphonopyruvate decarboxylase fragmentQuickGO ontologyBLASTP
75896327590327696integral membrane proteinQuickGO ontologyBLASTP
759041275914521041hypothetical proteinBLASTP
759147975985557077polyketide synthaseQuickGO ontologyBLASTP
759924976007301482secreted proteinQuickGO ontologyBLASTP
76007907601569780oxidoreductaseQuickGO ontologyBLASTP
76016547602007354ArsR-family transcriptional regulatorQuickGO ontologyBLASTP
76024987602773276hypothetical protein
760282976044241596methylmalonyll-CoA mutaseQuickGO ontologyBLASTP
76044687604947480probable isobutyryl-CoA mutase small subunitQuickGO ontologyBLASTP
76052617606241981thioredoxin reductaseQuickGO ontologyBLASTP
76062387606651414arsenate reductaseQuickGO ontologyBLASTP
76067447607052309ArsR-family transcriptional regulatorQuickGO ontologyBLASTP
760704976081551107arsenic resistance membrane transport proteinQuickGO ontologyBLASTP
760821476092781065monooxygenaseQuickGO ontologyBLASTP
760945276107651314hypothetical proteinBLASTP
761076276128072046hypothetical proteinBLASTP
761333576143871053hypothetical proteinBLASTP
761456476159281365hypothetical proteinBLASTP
761599476171121119hypothetical proteinBLASTP
761711276183831272DNA methylaseQuickGO ontologyBLASTP
76183807619000621hypothetical proteinBLASTP
76195577619880324hypothetical proteinBLASTP
76202907620910621hypothetical proteinBLASTP
76210037621461459hypothetical proteinBLASTP
762145876231851728hypothetical proteinBLASTP
76232857624064780hypothetical proteinBLASTP
76240677624633567hypothetical proteinBLASTP
76246647625485822hypothetical proteinBLASTP
76255577625841285hypothetical protein
76258577626660804hypothetical proteinBLASTP
76266577627040384hypothetical proteinBLASTP
76274777628124648hypothetical proteinBLASTP
76281217628879759hypothetical proteinBLASTP
76289057629609705hypothetical proteinBLASTP
76296237630453831hypothetical proteinBLASTP
76304507630887438hypothetical proteinBLASTP
763100676327031698protein kinase-like proteinQuickGO ontologyBLASTP
76327127633056345hypothetical protein
76331907633819630hypothetical proteinBLASTP
763388876356781791hypothetical proteinBLASTP
763567576368831209regulatory proteinQuickGO ontologyBLASTP
763726776384571191hypothetical proteinBLASTP
76384547638912459hypothetical proteinBLASTP
763895076400561107hypothetical proteinBLASTP
76400497640792744hypothetical proteinBLASTP
76408447641461618hypothetical proteinBLASTP
764150176425681068lipoproteinQuickGO ontology
76425917643502912hypothetical proteinBLASTP
76434927643734243hypothetical protein
76438077644442636hypothetical protein
76443967644821426hypothetical protein
76449007645406507hypothetical protein
76454037646185783hypothetical proteinBLASTP
764626476477871524ATP-binding proteinQuickGO ontologyBLASTP