Pre_GI Gene

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Host: NC_003366 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003366:2556457 Clostridium perfringens str. 13, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
25564572557419963probable monooxygenaseQuickGO ontologyBLASTP
25574512558023573hypothetical proteinBLASTP
255820525600941890hypothetical proteinBLASTP
256023325617561524hypothetical proteinBLASTP
256177325631881416two-component sensor histidine kinaseQuickGO ontologyBLASTP
25633692563836468two-component response regulatorQuickGO ontologyBLASTP
25639012564053153hypothetical proteinBLASTP
2564379256445072
256450525674082904BLASTP
2567512256758574
2567594256766673BLASTP
256783125693361506BLASTP
25698982570698801hypothetical proteinBLASTP
25708862571689804probable S-adenosylmethionine-dependent methltransferaseQuickGO ontologyBLASTP
25719052572660756hypothetical proteinBLASTP
25727792573081303hypothetical proteinBLASTP
25731562573617462hypothetical proteinBLASTP
25736502574219570hypothetical proteinBLASTP
2574364257443673BLASTP
25744462574559114BLASTP
257461125775142904BLASTP
2577618257769174
2577700257777273BLASTP
257793725794421506BLASTP