Pre_GI: BLASTP Hits

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Query: NC_017179:905347:922100 Clostridium difficile BI1, complete genome

Start: 922100, End: 922588, Length: 489

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:895500:912281912281912811531Clostridium difficile CD196 chromosome, complete genomeflavodoxin2e-90330
NC_013316:891782:909896909896910426531Clostridium difficile R20291, complete genomeputative flavodoxin2e-90330
NC_009089:965959:982712982712983200489Clostridium difficile 630, complete genomeputative flavodoxin6e-90328
NC_007484:2746078:276071227607122761314603Nitrosococcus oceani ATCC 19707, complete genomeFlavoprotein WrbA3e-0960.8
NC_013960:1778411:179732417973241797926603Nitrosococcus halophilus Nc4 chromosome, complete genomeflavoprotein WrbA8e-0959.7
NC_007511:3103999:310940031094003109954555Burkholderia sp. 383 chromosome 2, complete sequenceFlavodoxin/nitric oxide synthase9e-0856.2
NC_002488:1638946:165238816523881652966579Xylella fastidiosa 9a5c, complete genometryptophan repressor binding protein1e-0755.8
NC_014500:1862000:191089119108911911445555Dickeya dadantii 3937 chromosome, complete genomeMultimeric flavodoxin WrbA4e-0753.9
NC_003295:659837:680092680092680664573Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRP REPRESSOR BINDING PROTEIN HOMOLOG1e-0652.4
NC_009832:1280938:129767312976731298224552Serratia proteamaculans 568, complete genomeflavodoxin/nitric oxide synthase1e-0652
NC_009464:1397739:140416614041661404699534Uncultured methanogenic archaeon RC-I, complete genomepredicted redox-active protein (CxxC motif)2e-0652
NC_014310:1130344:113470811347081135262555Ralstonia solanacearum PSI07 megaplasmid, complete sequenceflavodoxin/nitric oxide synthase2e-0651.2
NC_012912:2901021:290972829097282910282555Dickeya zeae Ech1591, complete genomeflavodoxin/nitric oxide synthase6e-0650.1
NC_012880:2871480:287691128769112877465555Dickeya dadantii Ech703, complete genomeflavodoxin/nitric oxide synthase1e-0549.3