Pre_GI: BLASTP Hits

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Query: NC_017179:2539031:2540615 Clostridium difficile BI1, complete genome

Start: 2540615, End: 2541772, Length: 1158

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:2531019:2532603253260325337601158Clostridium difficile CD196 chromosome, complete genometoxic anion resistance protein0722
NC_017243:723000:7377317377317391941464Brachyspira intermedia PWS/A chromosome, complete genometoxic anion resistance family protein4e-101368
NC_014330:841841:8632638632638643421080Brachyspira pilosicoli 95/1000 chromosome, complete genometoxic anion resistance family protein3e-99362
NC_014387:2297304:2308955230895523101271173Butyrivibrio proteoclasticus B316 chromosome 1, complete genometoxic anion resistance family protein5e-90331
NC_010337:1:4429442956281200Heliobacterium modesticaldum Ice1, complete genometoxic ion resistance protein9e-75280
NC_014976:2231984:2252234225223422533941161Bacillus subtilis BSn5 chromosome, complete genomehypothetical protein2e-73276
NC_014656:1536540:155884615588461559700855Bifidobacterium longum subsp. longum BBMN68 chromosome, completetela2e-43176
NC_011000:2514897:2516718251671825178151098Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative toxic anion resistance protein2e-20100
NC_009256:2509806:2515217251521725163891173Burkholderia vietnamiensis G4 chromosome 1, complete sequencetoxic anion resistance family protein2e-20100
NC_014387:2297304:231014323101432311075933Butyrivibrio proteoclasticus B316 chromosome 1, complete genometoxic anion resistance family protein2e-1377