Pre_GI: BLASTP Hits

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Query: NC_016822:1839739:1839739 Shigella sonnei 53G, complete genome

Start: 1839739, End: 1840308, Length: 570

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:2406387:240984524098452410414570Escherichia coli ATCC 8739, complete genomeflavin reductase domain protein FMN-binding1e-96352
NC_011740:1494796:151330215133021513871570Escherichia fergusonii ATCC 35469, complete genomehypothetical protein3e-95347
NC_008563:1577879:159091115909111591480570Escherichia coli APEC O1, complete genomehypothetical protein2e-95347
NC_004431:1713141:172804717280471728616570Escherichia coli CFT073, complete genomeHypothetical protein yddH2e-95347
NC_007946:1586656:160199316019931602562570Escherichia coli UTI89, complete genomehypothetical protein YddH2e-95347
NC_011742:1528668:154400415440041544573570Escherichia coli S88 chromosome, complete genomehypothetical protein2e-95347
NC_011745:1581907:159519415951941595763570Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-95347
NC_012759:1409086:142336514233651423934570Escherichia coli BW2952 chromosome, complete genomehypothetical protein4e-95346
NC_010473:1607646:162190116219011622470570Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein4e-95346
NC_000913:1517051:153130615313061531875570Escherichia coli K12, complete genomehypothetical protein4e-95346
AC_000091:1521976:153499615349961535565570Escherichia coli W3110 DNA, complete genomehypothetical protein4e-95346
NC_011751:1714131:172747217274721728041570Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-94344
NC_011740:1494796:150761115076111508180570Escherichia fergusonii ATCC 35469, complete genomehypothetical protein2e-94344
NC_002655:2015000:203551120355112035954444Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-69261
NC_015137:1207769:121955312195531220215663Burkholderia sp. CCGE1001 chromosome 2, complete sequenceflavin reductase domain-containing protein FMN-binding protein1e-34145
NC_012912:777592:786722786722787300579Dickeya zeae Ech1591, complete genomeflavin reductase domain protein FMN-binding4e-32137
NC_014307:1855356:188795618879561888546591Ralstonia solanacearum CFBP2957 chromosome, complete genomeNAD(P)h-flavin oxidoreductase5e-30130
NC_010002:4256651:428486042848604285444585Delftia acidovorans SPH-1, complete genomeflavin reductase domain protein FMN-binding4e-29127
NC_016612:5231065:527459452745945275166573Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative flavin reductase domain protein5e-1994
NC_016612:5231065:525975552597555260327573Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative flavin reductase domain protein5e-1994
NC_011283:1178500:118039511803951180967573Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein1e-1686.3
NC_015856:268034:272965272965273522558Collimonas fungivorans Ter331 chromosome, complete genomeflavin reductase-like, FMN-binding protein9e-1166.6
NC_015572:2186394:220713222071322207674543Methylomonas methanica MC09 chromosome, complete genomeflavin reductase domain-containing protein FMN-binding protein1e-1066.2
NC_005363:3562205:356630835663083566910603Bdellovibrio bacteriovorus HD100, complete genomehypothetical protein5e-0960.8
NC_013132:153163:153163153163153723561Chitinophaga pinensis DSM 2588, complete genomeflavin reductase domain protein FMN-binding2e-0858.5
NC_010501:3448389:346549034654903466047558Pseudomonas putida W619, complete genomeflavin reductase domain protein FMN-binding8e-0753.5