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Query: NC_016582:9050528:9064853 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9064853, End: 9065206, Length: 354

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:1954915:1956510195651019575231014Pectobacterium wasabiae WPP163, complete genomepyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family4e-1063.5
NC_016514:2950860:295648429564842957470987Enterobacter cloacae EcWSU1 chromosome, complete genomeD-cysteine desulfhydrase7e-0959.3
NC_016816:1912366:194574119457411946727987Pantoea ananatis LMG 5342, complete genomeD-cysteine desulfhydrase9e-0958.9
NC_009717:271385:276085276085277080996Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence1-aminocyclopropane-1-carboxylate deaminase1e-0858.9
NC_008800:2695977:271205827120582713050993Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,D-cysteine desulfhydrase1e-0858.5
NC_009436:2685910:2703396270339627044811086Enterobacter sp. 638, complete genomeD-cysteine desulfhydrase2e-0857.8
NC_021066:3703725:371294437129443713936993Raoultella ornithinolytica B6, complete genomeD-cysteine desulfhydrase2e-0857.4
NC_015474:487517:497348497348498337990Pyrococcus sp. NA2 chromosome, complete genome1-aminocyclopropane-1-carboxylate deaminase6e-0856.2
NC_009937:311242:3112423112423122581017Azorhizobium caulinodans ORS 571, complete genome1-aminocyclopropane-1-carboxylate deaminase3e-0753.5
NC_012912:4071859:4108130410813041091461017Dickeya zeae Ech1591, complete genome1-aminocyclopropane-1-carboxylate deaminase9e-0752.4
NC_010505:1581429:1599479159947916004891011Methylobacterium radiotolerans JCM 2831, complete genome1-aminocyclopropane-1-carboxylate deaminase1e-0652
NC_008697:118859:144855144855145823969Nocardioides sp. JS614 plasmid pNOCA01, complete sequence1-aminocyclopropane-1-carboxylate deaminase6e-0649.7
NC_019973:5899142:5927712592771259287251014Mesorhizobium australicum WSM2073, complete genome1-aminocyclopropane-1-carboxylate deaminase1e-0548.9
NC_014923:5970182:5998755599875559997681014Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete1-aminocyclopropane-1-carboxylate deaminase1e-0548.9
NC_015675:6538500:6553423655342365544361014Mesorhizobium opportunistum WSM2075 chromosome, complete genome1-aminocyclopropane-1-carboxylate deaminase1e-0548.9