Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:10638524:10643615 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10643615, End: 10644085, Length: 471

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015514:181773:185076185076185537462Cellulomonas fimi ATCC 484 chromosome, complete genomehypothetical protein8e-45179
NC_011898:1802971:182650218265021826957456Clostridium cellulolyticum H10, complete genomehypothetical protein1e-33141
NC_005125:4283345:430186943018694302240372Gloeobacter violaceus PCC 7421, complete genomehypothetical protein9e-29125
NC_005125:4283345:430151843015184301844327Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-27121
NC_015589:1439794:144692214469221447191270Desulfotomaculum ruminis DSM 2154 chromosome, complete genome5e-1270.1