Pre_GI: BLASTP Hits

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Query: NC_013410:2519441:2539481 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2539481, End: 2541010, Length: 1530

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009615:3904962:3918369391836939198591491Parabacteroides distasonis ATCC 8503 chromosome, complete genomeflippase1e-58228
NC_018720:2097694:2106452210645221079841533Bifidobacterium asteroides PRL2011 chromosome, complete genomepolysaccharide biosynthesis protein9e-50198
NC_013714:2086526:2096552209655220980871536Bifidobacterium dentium Bd1, complete genomeputative flippase5e-46186
NC_017219:2292040:2318911231891123204461536Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein5e-45182
NC_011593:2288993:2319093231909323206281536Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,polysaccharide biosynthesis protein5e-45182
NC_013714:2086526:2089561208956120910901530Bifidobacterium dentium Bd1, complete genomeHypothetical transmembrane protein possibly involved in polysaccharide biosynthesis9e-44178
NC_017068:638868:6529166529166544331518Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein4e-35149
NC_011832:820658:8490678490678506351569Candidatus Methanosphaerula palustris E1-9c, complete genomepolysaccharide biosynthesis protein4e-35149
NC_008553:1038344:1042374104237410439271554Methanosaeta thermophila PT, complete genomepolysaccharide biosynthesis protein8e-35148
NC_007498:2087811:2105832210583221073521521Pelobacter carbinolicus DSM 2380, complete genomeO-antigen and teichoic acid export protein1e-33144
NC_009051:930758:9357359357359372791545Methanoculleus marisnigri JR1, complete genomepolysaccharide biosynthesis protein3e-33143
NC_011832:366092:3851003851003866591560Candidatus Methanosphaerula palustris E1-9c, complete genomepolysaccharide biosynthesis protein2e-28127
NC_008942:875060:8829498829498845171569Methanocorpusculum labreanum Z, complete genomehypothetical protein5e-24112
NC_010172:3946644:3952432395243239540361605Methylobacterium extorquens PA1, complete genomepolysaccharide biosynthesis protein6e-1479.3
NC_010995:4083960:4094660409466040961891530Cellvibrio japonicus Ueda107, complete genomepolysaccharide biosynthesis family protein9e-0755.5