Pre_GI: BLASTP Hits

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Query: NC_012917:3241196:3265157 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3265157, End: 3265630, Length: 474

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011283:4966471:498643149864314986904474Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein2e-37154
NC_013353:5272863:528687452868745287347474Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein9e-37152
AP010958:5272863:528687452868745287347474Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein9e-37152
NC_012759:2633949:265498226549822655449468Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage protein4e-35146
NC_010473:2839902:286093528609352861402468Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; predicted protein4e-35146
NC_000913:2746886:276917027691702769637468Escherichia coli K12, complete genomeCP4-57 prophage; predicted protein4e-35146
AC_000091:2747520:276980427698042770271468Escherichia coli W3110 DNA, complete genomehypothetical protein4e-35146