Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1868121 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1868121, End: 1868777, Length: 657

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014500:3175283:319535231953523195999648Dickeya dadantii 3937 chromosome, complete genomehypothetical protein1e-59229
NC_011283:4438500:446788944678894468524636Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein1e-25116
NC_014562:2563466:257681525768152577525711Pantoea vagans C9-1 chromosome, complete genomeChromodomain-helicase-DNA-binding protein 19e-25113
NC_012214:2805297:281568728156872816322636Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein1e-24113
NC_013941:3300000:331693933169393317553615Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-23109
NC_009436:3117661:313250931325093133144636Enterobacter sp. 638, complete genomehypothetical protein6e-23107
NC_015556:2265940:231512523151252315751627Pseudomonas fulva 12-X chromosome, complete genomePeptidoglycan-binding domain 1 protein7e-0960.8
NC_009349:3396:158371583716415579Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completehypothetical protein1e-0550.1