Pre_GI: BLASTN Hits

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Query: NC_011959:131800 Thermomicrobium roseum DSM 5159, complete genome

Start: 131800, End: 152910, Length: 21111

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002939:1601706*1601706162134919644Geobacter sulfurreducens PCA, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013523:959625*95962598302823404Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015318:249445*24944527619526751Hippea maritima DSM 10411 chromosome, complete genome1e-0560BLASTN svgBLASTP svg