Pre_GI: BLASTP Hits

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Query: NC_010572:6293417:6312285 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 6312285, End: 6312566, Length: 282

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:1922930:192551719255171925798282Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator2e-45181
NC_018750:2005229:200776720077672008048282Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, AsnC family3e-42170
NC_014210:3742112:375625937562593756534276Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, AsnC family4e-30129
NC_010617:1428902:143383014338301434126297Kocuria rhizophila DC2201, complete genomehypothetical protein2e-29127
NC_015671:1540860:155791015579101558203294Cellvibrio gilvus ATCC 13127 chromosome, complete genometranscription regulator AsnC-type-like protein2e-26117
NC_009664:3718927:373836637383663738644279Kineococcus radiotolerans SRS30216, complete genomeputative transcriptional regulator, AsnC family3e-25113
NC_015588:1965787:196939219693921969670279Isoptericola variabilis 225 chromosome, complete genomeTranscription regulator, AsnC-type3e-24110
NC_014151:2312000:231582423158242316105282Cellulomonas flavigena DSM 20109 chromosome, complete genometranscriptional regulator, AsnC family1e-23108
NC_012803:1302261:130494213049421305223282Micrococcus luteus NCTC 2665, complete genometranscriptional regulator, AsnC family8e-24108
NC_015514:2414617:242008824200882420381294Cellulomonas fimi ATCC 484 chromosome, complete genometranscription regulator AsnC-type-like protein7e-24108
NC_013169:1661135:166289916628991663180282Kytococcus sedentarius DSM 20547, complete genometranscriptional regulator, AsnC family1e-2098.6
NC_008025:2407618:240823124082312408524294Deinococcus geothermalis DSM 11300, complete genomeputative transcriptional regulator, AsnC family4e-1993.6
NC_009523:1365717:138375913837591384037279Roseiflexus sp. RS-1 chromosome, complete genomeAsnC family transcriptional regulator2e-1787.8
NC_013926:614206:616364616364616729366Aciduliprofundum boonei T469 chromosome, complete genometranscriptional regulator, AsnC family2e-0754.3
NC_000917:1246806:125457312545731254806234Archaeoglobus fulgidus DSM 4304, complete genometranscriptional regulatory protein, AsnC family2e-0650.8
NC_000961:1481685:148723114872311487686456Pyrococcus horikoshii OT3, complete genometranscriptional regulator3e-0650.4