Pre_GI: BLASTP Hits

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Query: NC_010322:768849:778305 Pseudomonas putida GB-1 chromosome, complete genome

Start: 778305, End: 779192, Length: 888

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015554:1215401:121652412165241217402879Alteromonas sp. SN2 chromosome, complete genomeintegrase5e-58224
NC_014973:3414459:343560034356003436487888Geobacter sp. M18 chromosome, complete genomephage integrase family protein6e-54211
NC_010814:1441327:147711914771191478009891Geobacter lovleyi SZ, complete genomephage integrase family protein1e-52206
NC_014394:707305:715491715491716399909Gallionella capsiferriformans ES-2 chromosome, complete genomephage integrase family protein4e-47188
NC_010815:40357:495974959750532936Geobacter lovleyi SZ plasmid pGLOV01, complete sequencehypothetical protein3e-0755.8
NC_020409:621792:654556654556655479924Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completehypothetical protein2e-0653.5