Pre_GI: BLASTP Hits

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Query: NC_010322:6037566:6038578 Pseudomonas putida GB-1 chromosome, complete genome

Start: 6038578, End: 6039204, Length: 627

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015276:565701:568807568807569499693Marinomonas mediterranea MMB-1 chromosome, complete genomeprotein of unknown function DUF18265e-25114
NC_015554:4648919:465453046545304655219690Alteromonas sp. SN2 chromosome, complete genomehypothetical protein2e-23108
NC_014166:1008266:102614610261461026820675Arcobacter nitrofigilis DSM 7299 chromosome, complete genomehypothetical protein3e-21101
NC_013889:2561381:256262825626282563275648Thioalkalivibrio sp. K90mix chromosome, complete genomeProtein of unknown function DUF18262e-0858.9
NC_009952:2752500:275873827587382759373636Dinoroseobacter shibae DFL 12, complete genomehypothetical protein1e-0756.2
NC_006677:2402282:242809924280992428704606Gluconobacter oxydans 621H, complete genomehypothetical protein8e-0753.5