Pre_GI: BLASTP Hits

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Query: NC_009439:1297851:1300004 Pseudomonas mendocina ymp, complete genome

Start: 1300004, End: 1301239, Length: 1236

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:1627347:1649235164923516505091275Azotobacter vinelandii CA6, complete genomeLamB type porin6e-128457
NC_011145:4797548:4802834480283448042401407Anaeromyxobacter sp. K, complete genomeporin LamB type3e-41169
NC_007760:4751000:4754431475443147558221392Anaeromyxobacter dehalogenans 2CP-C, complete genomePorin, LamB type8e-41168
NC_014310:1338936:1341550134155013427911242Ralstonia solanacearum PSI07 megaplasmid, complete sequencelamb type porin transmembrane protein4e-1479.3
NC_020181:1344259:1347557134755713488941338Enterobacter aerogenes EA1509E, complete genomeMaltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)5e-1272.4
NC_016514:2334870:2354010235401023555271518Enterobacter cloacae EcWSU1 chromosome, complete genomesucrose porin2e-1170.5
NC_015224:647341:6673406673406687911452Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,sucrose porin8e-0962
NC_008800:4488112:4488112448811244894461335Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative outer membrane porin1e-0861.6