Pre_GI: BLASTP Hits

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Query: NC_008262:2348328:2361356 Clostridium perfringens SM101, complete genome

Start: 2361356, End: 2361976, Length: 621

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013173:815696:838244838244838897654Desulfomicrobium baculatum DSM 4028, complete genomeCBS domain containing protein2e-1168.9
NC_015760:343874:343874343874344533660Streptococcus salivarius CCHSS3, complete genomeacetoin utilization protein acuB3e-0962
NC_014915:2900209:290592829059282906572645Geobacillus sp. Y412MC52 chromosome, complete genomeCBS domain containing protein4e-0858.2
NC_013411:681907:695985695985696629645Geobacillus sp. Y412MC61, complete genomeCBS domain containing protein4e-0858.2
NC_015565:2027279:208002120800212080653633Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeCBS domain-containing protein8e-0857
NC_010175:2488000:250117125011712501818648Chloroflexus aurantiacus J-10-fl, complete genomeCBS domain containing protein4e-0754.7
NC_011661:961129:967097967097967741645Dictyoglomus turgidum DSM 6724, complete genomeputative signal transduction protein with CBS domains6e-0754.3
NC_013740:15401:220122201222680669Acidaminococcus fermentans DSM 20731, complete genomeCBS domain containing membrane protein8e-0753.5
NC_015589:2878000:289512828951282895760633Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeCBS domain-containing protein4e-0651.2