Pre_GI: BLASTN Hits

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Query: NC_007793:1574456 Staphylococcus aureus subsp. aureus USA300, complete genome

Start: 1574456, End: 1594869, Length: 20414

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: USA300, a methicillin resistant strain of Staphylococcus aureus, has been implicated in epidemiologically unassociated outbreaks of skin and soft tissue infections among healthy individuals in at least 21 U.S. states, Canada and Europe. USA300 is also noted for its strong association with unusually invasive disease, including severe septicemia, necrotizing pneumonia and necrotizing fasciitis. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010079:15643271564327160887644550Staphylococcus aureus subsp. aureus USA300_TCH1516, complete08512BLASTN svgBLASTP svg
NC_007795:19220001922000197572353724Staphylococcus aureus subsp. aureus NCTC 8325, complete genome0648BLASTN svgBLASTP svg
NC_002952:21257502125750215605630307Staphylococcus aureus subsp. aureus MRSA252, complete genome0728BLASTN svgBLASTP svg
NC_007793:20868962086896211336426469Staphylococcus aureus subsp. aureus USA300, complete genome0728BLASTN svgBLASTP svg
NC_002745:20187612018761203681818058Staphylococcus aureus subsp. aureus N315, complete genome0763BLASTN svgBLASTP svg
NC_007168:18393821839382185725517874Staphylococcus haemolyticus JCSC1435, complete genome0811BLASTN svgBLASTP svg
NC_010079:21028562102856212916726312Staphylococcus aureus subsp. aureus USA300_TCH1516, complete0846BLASTN svgBLASTP svg
NC_007795:20340002034000206399930000Staphylococcus aureus subsp. aureus NCTC 8325, complete genome0961BLASTN svgBLASTP svg
NC_002951:35102935102938944738419Staphylococcus aureus subsp. aureus COL, complete genome01094BLASTN svgBLASTP svg
NC_002758:91882791882794103822212Staphylococcus aureus subsp. aureus Mu50, complete genome02076BLASTN svgBLASTP svg
NC_009782:92027292027295475434483Staphylococcus aureus subsp. aureus Mu3, complete genome02076BLASTN svgBLASTP svg
NC_002952:15920001592000162211730118Staphylococcus aureus subsp. aureus MRSA252, complete genome05519BLASTN svgBLASTP svg
NC_007622:1842000*1842000189289150892Staphylococcus aureus RF122, complete genome2e-158567BLASTN svgBLASTP svg
NC_002953:998944998944101716318220Staphylococcus aureus subsp. aureus MSSA476, complete genome4e-128466BLASTN svgBLASTP svg
NC_002758:21011372101137212959928463Staphylococcus aureus subsp. aureus Mu50, complete genome4e-113416BLASTN svgBLASTP svg
NC_003923:15335001533500155786524366Staphylococcus aureus subsp. aureus MW2, complete genome5e-106392BLASTN svgBLASTP svg
NC_014925:57875957875960460625848Staphylococcus pseudintermedius HKU10-03 chromosome, complete4e-73283BLASTN svgBLASTP svg
NC_009782:20918152091815211324121427Staphylococcus aureus subsp. aureus Mu3, complete genome7e-53216BLASTN svgBLASTP svg