Pre_GI: BLASTP Hits

Some Help

Query: NC_007613:761234:778677 Shigella boydii Sb227, complete genome

Start: 778677, End: 778892, Length: 216

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016845:1773416:179101317910131791228216Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein1e-28124
NC_011149:2802199:280268928026892802904216Salmonella enterica subsp. enterica serovar Agona str. SL483,holin family protein1e-28124
NC_003198:4453457:448951044895104489725216Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible secretion protein8e-28122
NC_020260:312805:334742334742334957216Cronobacter sakazakii Sp291, complete genomephage-holin-like protein3e-22103
NC_014837:3766426:376744737674473767659213Pantoea sp. At-9b chromosome, complete genomesecretory protein4e-21100
NC_014562:2871765:287305628730562873268213Pantoea vagans C9-1 chromosome, complete genomepossible secretory protein1e-1995.1
NC_017047:4037674:405922140592214059436216Rahnella aquatilis HX2 chromosome, complete genomeprophage Hp1 family holin6e-1476.3
NC_015061:1598920:162226316222631622472210Rahnella sp. Y9602 chromosome, complete genomeprophage Hp1 family holin2e-1373.9
NC_020211:4598217:459871345987134598922210Serratia marcescens WW4, complete genomeprophage Hp1 family holin2e-1064.7
NC_020064:871338:892926892926893132207Serratia marcescens FGI94, complete genomeholin, HP1 family2e-0961.2
NC_017047:1551836:157296315729631573184222Rahnella aquatilis HX2 chromosome, complete genomeprophage Hp1 family holin1e-0858.9
NC_016818:1605918:162622616262261626435210Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein7e-0856.2