Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6098758 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6098758, End: 6099795, Length: 1038

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012988:2455807:2466281246628124673391059Methylobacterium extorquens DM4, complete genomehypothetical protein5e-96351
NC_007963:1552761:1562259156225915634641206Chromohalobacter salexigens DSM 3043, complete genomehypothetical protein1e-1584.3
NC_007948:3502843:3510666351066635118561191Polaromonas sp. JS666, complete genomehypothetical protein2e-1273.6
NC_019904:1616742:1627815162781516289151101Echinicola vietnamensis DSM 17526 chromosome, complete genomeDGQHR domain-containing protein4e-1272.4
NC_007761:3047321:305553230555323056515984Rhizobium etli CFN 42, complete genomehypothetical protein9e-1271.2
NC_020387:796253:8047598047598070622304Dehalococcoides mccartyi BTF08, complete genomeDGQHR domain-containing protein2e-1170.1
NC_013282:551219:5677755677755689471173Cronobacter turicensis, complete genomehypothetical protein3e-1169.7
NC_014963:4091910:4114338411433841154831146Terriglobus saanensis SP1PR4 chromosome, complete genomeDGQHR domain-containing protein4e-1169.3
NC_015577:3244857:3254705325470532559881284Treponema azotonutricium ZAS-9 chromosome, complete genomeputative DGQHR domain-containing protein1e-1067.4
NC_011891:4450031:4465720446572044668681149Anaeromyxobacter dehalogenans 2CP-1, complete genomeDGQHR domain protein1e-0964.3
NC_019904:1616742:1624905162490516271992295Echinicola vietnamensis DSM 17526 chromosome, complete genomeDGQHR domain-containing protein1e-0964.3
NC_009659:3520093:3528157352815735293351179Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein5e-0962.4
NC_008782:3110744:3125647312564731268641218Acidovorax sp. JS42, complete genomehypothetical protein7e-0858.5
NC_010688:149161:160054160054161040987Xanthomonas campestris pv. campestris, complete genomehypothetical protein8e-0858.2
NC_014033:1152994:1167499116749911697962298Prevotella ruminicola 23 chromosome, complete genomehypothetical protein1e-0757.4
NC_009943:940835:9482299482299492751047Candidatus Desulfococcus oleovorans Hxd3, complete genomeconserved hypothetical protein6e-0755.5