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Query: NC_004578:4708220:4729025 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4729025, End: 4730221, Length: 1197

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015733:3736104:3796936379693637981171182Pseudomonas putida S16 chromosome, complete genomehypothetical protein4e-156551
NC_012660:2143376:2156249215624921574421194Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein3e-154545
NC_014306:1244721:1243559124355912447521194Erwinia billingiae Eb661, complete genomeconserved uncharacterized protein1e-140499
NC_017506:3717261:3728390372839037295741185Marinobacter adhaerens HP15 chromosome, complete genomespermidine/putrescine ABC transporter binding protein1e-86320
NC_012691:2146473:2146473214647321477621290Tolumonas auensis DSM 9187, complete genomeputative spermidine/putrescine transport system substrate-binding protein7e-72271
NC_011894:79282:1062691062691075521284Methylobacterium nodulans ORS 2060, complete genomeABC transporter substrate-binding protein1e-65250
NC_009485:1946000:1965163196516319664281266Bradyrhizobium sp. BTAi1 chromosome, complete genomeABC transporter substrate-binding protein4e-61235
NC_017059:3404000:3404073340407334052271155Rhodospirillum photometricum DSM 122, complete genomeSpermidine/putrescine-binding periplasmic protein2e-0653.9