Pre_GI: BLASTP Hits

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Query: NC_004578:4061372:4085993 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4085993, End: 4086826, Length: 834

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013166:242863:248922248922249779858Kangiella koreensis DSM 16069, complete genomeIon transport protein5e-60231
NC_003552:2502689:252696025269602527799840Methanosarcina acetivorans C2A, complete genomepotassium channel protein1e-59229
NC_015161:354000:360785360785361630846Deinococcus proteolyticus MRP chromosome, complete genomeIon transport protein2e-54212
NC_018868:4174794:417479441747944175672879Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomepotassium channel1e-53209
NC_013440:9146562:916387891638789164699822Haliangium ochraceum DSM 14365, complete genomeIon transport protein3e-53208
NC_011027:1153592:117125711712571172075819Chlorobaculum parvum NCIB 8327, complete genomeIon transport protein1e-52206
NC_015968:2583721:258408225840822584951870Enterobacter asburiae LF7a chromosome, complete genomeIon transport protein1e-44179
NC_016514:2647984:264798426479842648964981Enterobacter cloacae EcWSU1 chromosome, complete genomepotassium channel protein1e-43176
NC_014121:1653385:166998716699871670856870Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein6e-42171
NC_011283:2185462:218652121865212187348828Klebsiella pneumoniae 342 chromosome, complete genometransporter cation channel family4e-41168
NC_013850:2103469:212005921200592120892834Klebsiella variicola At-22 chromosome, complete genomeIon transport protein4e-41168
NC_020063:2011019:201101920110192011855837Enterobacteriaceae bacterium strain FGI 57, complete genomeKef-type K+ ransport system, predicted NAD-binding component6e-40164
NC_010515:1124298:114619111461911147042852Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceIon transport protein2e-38159
NC_020260:1535394:155521315552131556049837Cronobacter sakazakii Sp291, complete genomehypothetical protein2e-33143
NC_009778:1477841:149627814962781497144867Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-33142
NC_007516:124486:129025129025129852828Synechococcus sp. CC9605, complete genomepossible potassium channel, VIC family3e-29129
NC_008319:171847:205611205611206435825Synechococcus sp. CC9311, complete genomecation transporter, voltage-gated ion channel (VIC) family protein1e-27123
NC_010546:1175979:119186711918671192652786Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceion transport protein5e-1788.2
NC_020911:4465500:447536944753694476304936Octadecabacter antarcticus 307, complete genomeputative ion channel2e-1686.7
NC_009720:5046861:5048602504860250497591158Xanthobacter autotrophicus Py2, complete genomecyclic nucleotide-binding protein1e-1480.5
NC_010336:607145:609147609147609827681Francisella philomiragia subsp. philomiragia ATCC 25017, completeion transport protein4e-1478.6
NC_015696:220798:250987250987251571585Francisella sp. TX077308 chromosome, complete genomepotassium voltage-gated channel subfamily protein1e-1377.4
NC_014507:906960:938626938626939591966Methanoplanus petrolearius DSM 11571 chromosome, complete genomeion transport 2 domain-containing protein6e-1168.2
NC_014926:1108811:1111454111145411129501497Thermovibrio ammonificans HB-1 chromosome, complete genome1e-1067
NC_014729:630152:634186634186635025840Halogeometricum borinquense DSM 11551 chromosome, complete genomeion channel3e-1066.2
NC_013967:2103968:210396821039682104810843Haloferax volcanii DS2 chromosome, complete genomeIon channel family7e-1064.7
NC_003552:1816864:183352118335211833943423Methanosarcina acetivorans C2A, complete genomehypothetical protein1e-0860.5
NC_015730:3853065:387904038790403879825786Roseobacter litoralis Och 149 chromosome, complete genomeputative ion channel6e-0858.2
NC_009662:837500:8607008607008622801581Nitratiruptor sp. SB155-2, complete genomepotassium channel protein1e-0757.4
NC_014935:711765:7131957131957147751581Nitratifractor saLSUginis DSM 16511 chromosome, complete genometrka-n domain protein1e-0757
NC_010730:180000:2013802013802029211542Sulfurihydrogenibium sp. YO3AOP1, complete genomeIon transport protein3e-0756.2
NC_021182:2536000:253660625366062537412807Clostridium pasteurianum BC1, complete genomeIon channel1e-0653.9
NC_013849:1396051:139882413988241399351528Ferroglobus placidus DSM 10642 chromosome, complete genomehypothetical protein2e-0652.8
NC_011757:1246000:127110512711051271854750Methylobacterium chloromethanicum CM4, complete genomeIon transport 2 domain protein4e-0652
NC_010172:1199725:120673712067371207507771Methylobacterium extorquens PA1, complete genomeIon transport 2 domain protein5e-0652