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Query: NC_004547:843475:861960 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 861960, End: 862904, Length: 945

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009511:5362705:536505753650575366055999Sphingomonas wittichii RW1 chromosome, complete genomeSAF domain-containing protein5e-24111
NC_004463:3857763:386238838623883863377990Bradyrhizobium japonicum USDA 110, complete genomeputative pilus assembly protein1e-1170.5
NC_008536:5259438:527804752780475278949903Solibacter usitatus Ellin6076, complete genomeSAF domain2e-0756.6
NC_010718:2460893:246659024665902467291702Natranaerobius thermophilus JW/NM-WN-LF, complete genomeFlp pilus assembly protein CpaB3e-0652.8
NC_007614:2675302:268803526880352688820786Nitrosospira multiformis ATCC 25196 chromosome 1, completeFlp pilus assembly CpaB5e-0652.4