Pre_GI: BLASTP Hits

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Query: NC_004129:5373886:5407275 Pseudomonas fluorescens Pf-5, complete genome

Start: 5407275, End: 5407790, Length: 516

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:5091772:512980651298065130336531Pseudomonas aeruginosa DK2 chromosome, complete genometype IV B pilus protein2e-30131
NC_008463:5246954:528481852848185285348531Pseudomonas aeruginosa UCBPP-PA14, complete genometype IV B pilus protein4e-30130
NC_009656:4527457:461040146104014610931531Pseudomonas aeruginosa PA7 chromosome, complete genometype IV B pilus protein6e-30129
NC_012751:942315:946975946975947556582Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilS2 type IV pilus biosynthesis protein9e-0959.7
NC_005126:1223042:123565412356541236268615Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-0858.9
NC_012751:1296877:131247813124781312987510Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilS2 type IV pilus biosynthesis protein1e-0756.2
NC_009708:4182460:420409742040974204684588Yersinia pseudotuberculosis IP 31758 chromosome, complete genometype IV pilus biogenesis protein2e-0651.6