Pre_GI: BLASTP Hits

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Query: NC_003888:6103534:6111177 Streptomyces coelicolor A3(2), complete genome

Start: 6111177, End: 6111392, Length: 216

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:6127431:613467761346776134892216Streptomyces fulvissimus DSM 40593, complete genomePutative transcriptional regulator2e-27120
NC_009706:1935418:195186219518621952668807Clostridium kluyveri DSM 555 chromosome, complete genomephage transcriptional regulator3e-0857
NC_015660:1076159:108793410879341088275342Geobacillus thermoglucosidasius C56-YS93 chromosome, completehelix-turn-helix domain-containing protein5e-0856.6
NC_016052:842762:846580846580846834255Tetragenococcus halophilus NBRC 12172, complete genomeputative Xre family DNA-binding protein9e-0855.5
NC_015690:7422911:743071274307127430906195Paenibacillus mucilaginosus KNP414 chromosome, complete genomeXRE family transcriptional regulator1e-0755.1
NC_016935:7512884:752068375206837520877195Paenibacillus mucilaginosus 3016 chromosome, complete genomeXRE family transcriptional regulator1e-0755.1
NC_013205:526281:535213535213535704492Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, XRE family4e-0753.5
NC_015732:982774:9996799996791000284606Spirochaeta caldaria DSM 7334 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0651.6
NC_014831:8965:177711777118166396Thermaerobacter marianensis DSM 12885 chromosome, complete genomehelix-turn-helix domain protein4e-0650.1
NC_011663:4943179:495663949566394956953315Shewanella baltica OS223 chromosome, complete genomeXRE family transcriptional regulator5e-0649.7