Pre_GI: BLASTP Hits

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Query: NC_003888:6103534:6104109 Streptomyces coelicolor A3(2), complete genome

Start: 6104109, End: 6104417, Length: 309

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:2216309:223005422300542230362309Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein7e-54208
NC_016109:5768000:577479757747975775123327Kitasatospora setae KM-6054, complete genomehypothetical protein6e-50195
NC_002935:1534889:153817315381731538478306Corynebacterium diphtheriae NCTC 13129, complete genomehypothetical protein1e-33141
NC_016782:1520324:152649915264991526804306Corynebacterium diphtheriae 241 chromosome, complete genomehypothetical protein1e-33141
NC_016786:1519481:152676415267641527069306Corynebacterium diphtheriae HC01 chromosome, complete genomehypothetical protein1e-33141
NC_016787:1509831:151806615180661518371306Corynebacterium diphtheriae HC03 chromosome, complete genomehypothetical protein1e-33141
NC_016788:1509943:152153115215311521836306Corynebacterium diphtheriae HC04 chromosome, complete genomehypothetical protein1e-33141
NC_016790:1480441:149402614940261494331306Corynebacterium diphtheriae VA01 chromosome, complete genomehypothetical protein1e-33141
NC_017301:1425293:143980714398071440112306Corynebacterium pseudotuberculosis C231 chromosome, completehypothetical protein7e-32135
NC_017300:1426975:143741914374191437724306Corynebacterium pseudotuberculosis 1002 chromosome, completehypothetical protein7e-32135
NC_016932:1414226:142466514246651424970306Corynebacterium pseudotuberculosis 316 chromosome, complete genomehypothetical protein7e-32135
NC_014329:1407880:144006114400611440366306Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein7e-32135
NC_014643:1986440:199814119981411998476336Rothia dentocariosa ATCC 17931 chromosome, complete genomehypothetical protein7e-25112