Pre_GI: BLASTN Hits

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Query: NC_013929:3986272 Streptomyces scabiei 87.22 chromosome, complete genome

Start: 3986272, End: 4006705, Length: 20434

Host Lineage: Streptomyces scabiei; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015953:18609461860946187926918324Streptomyces sp. SirexAA-E chromosome, complete genome1e-38168BLASTN svgBLASTP svg
NC_013510:54994475499447554883349387Thermomonospora curvata DSM 43183, complete genome3e-24121BLASTN svgBLASTP svg
NC_014815:1490957*1490957151776526809Micromonospora sp. L5 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_014391:1226922*1226922125015223231Micromonospora aurantiaca ATCC 27029 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_014210:41884484188448421709828651Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,3e-1591.7BLASTN svgBLASTP svg
NC_013093:57919615791961581744825488Actinosynnema mirum DSM 43827, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_021177:69546756954675697309918425Streptomyces fulvissimus DSM 40593, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003155:210240*21024026219151952Streptomyces avermitilis MA-4680, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010572:83524628352462839090038439Streptomyces griseus subsp. griseus NBRC 13350, complete genome9e-0660BLASTN svgBLASTP svg