Pre_GI: BLASTN Hits

Some Help

Query: NC_013410:1491000 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1491000, End: 1510768, Length: 19769

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014924:30654303065430309278427355Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012489:29139202913920293688022961Gemmatimonas aurantiaca T-27, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_013959:82686882686887209945232Sideroxydans lithotrophicus ES-1 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_004578:48696734869673488861018938Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_018645:17988741798874183074531872Desulfobacula toluolica Tol2, complete genome9e-0660BLASTN svgBLASTP svg