Query: NC_013410:1285857 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,
Start: 1285857, End: 1333046, Length: 47190
Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria
General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_011027:1763952 | 1763952 | 1782599 | 18648 | Chlorobaculum parvum NCIB 8327, complete genome | 7e-24 | 121 | BLASTN svg | BLASTP svg |
NC_003552:4782635 | 4782635 | 4807599 | 24965 | Methanosarcina acetivorans C2A, complete genome | 1e-22 | 117 | BLASTN svg | BLASTP svg |
NC_015416:525018 | 525018 | 549872 | 24855 | Methanosaeta concilii GP-6 chromosome, complete genome | 2e-21 | 113 | BLASTN svg | BLASTP svg |
NC_012881:478042 | 478042 | 499316 | 21275 | Desulfovibrio salexigens DSM 2638, complete genome | 2e-21 | 113 | BLASTN svg | BLASTP svg |
NC_013959:826868 | 826868 | 872099 | 45232 | Sideroxydans lithotrophicus ES-1 chromosome, complete genome | 7e-21 | 111 | BLASTN svg | BLASTP svg |
NC_003901:860242 | 860242 | 884099 | 23858 | Methanosarcina mazei Go1, complete genome | 4e-19 | 105 | BLASTN svg | BLASTP svg |
NC_021150:4929670 | 4929670 | 4972701 | 43032 | Azotobacter vinelandii CA6, complete genome | 2e-18 | 103 | BLASTN svg | BLASTP svg |
NC_012560:4929683 | 4929683 | 4972714 | 43032 | Azotobacter vinelandii DJ, complete genome | 2e-18 | 103 | BLASTN svg | BLASTP svg |
NC_008278:7409711 | 7409711 | 7432274 | 22564 | Frankia alni ACN14a, complete genome | 4e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_020389:714178 | 714178 | 737073 | 22896 | Methanosarcina mazei Tuc01, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_015500:1236874* | 1236874 | 1278099 | 41226 | Treponema brennaborense DSM 12168 chromosome, complete genome | 2e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_010546:553774 | 553774 | 576285 | 22512 | Cyanothece sp. ATCC 51142 chromosome circular, complete sequence | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_013771:684966 | 684966 | 711099 | 26134 | Cyanobacterium UCYN-A, complete genome | 9e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_009801:995396 | 995396 | 1019468 | 24073 | Escherichia coli E24377A, complete genome | 9e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_014216:2860342 | 2860342 | 2885141 | 24800 | Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome | 4e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_011894:4066926 | 4066926 | 4110599 | 43674 | Methylobacterium nodulans ORS 2060, complete genome | 1e-09 | 73.8 | BLASTN svg | BLASTP svg |
NC_020291:1535402 | 1535402 | 1562169 | 26768 | Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome | 4e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013714:1521404* | 1521404 | 1546427 | 25024 | Bifidobacterium dentium Bd1, complete genome | 6e-06 | 61.9 | BLASTN svg | BLASTP svg |