Query: NC_011769:2016000 Desulfovibrio vulgaris str. 'Miyazaki F', complete genome
Start: 2016000, End: 2048599, Length: 32600
Host Lineage: Desulfovibrio vulgaris; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria
General Information: Desulfovibrio vulgaris str. 'Miyazaki F' has one of the best characterized nickel/iron hydrogenases. A sulfate reducing bacterium. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars in losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. This species is a sulfate reducer commonly found in a variety of soil and aquatic environments.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_002937:1764117* | 1764117 | 1825746 | 61630 | Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete | 1e-64 | 256 | BLASTN svg | BLASTP svg |
NC_002937:1578213* | 1578213 | 1604229 | 26017 | Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete | 2e-60 | 242 | BLASTN svg | BLASTP svg |
NC_008751:1043269 | 1043269 | 1086074 | 42806 | Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome | 9e-41 | 176 | BLASTN svg | BLASTP svg |
NC_002937:2263763 | 2263763 | 2292168 | 28406 | Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete | 8e-32 | 147 | BLASTN svg | BLASTP svg |
NC_014365:2843126 | 2843126 | 2878140 | 35015 | Desulfarculus baarsii DSM 2075 chromosome, complete genome | 8e-26 | 127 | BLASTN svg | BLASTP svg |
NC_002937:2068117* | 2068117 | 2144645 | 76529 | Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete | 7e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_002937:1548081* | 1548081 | 1574507 | 26427 | Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_008751:2988235 | 2988235 | 3014901 | 26667 | Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome | 6e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_011894:7421867* | 7421867 | 7445587 | 23721 | Methylobacterium nodulans ORS 2060, complete genome | 3e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_014006:1204500 | 1204500 | 1223667 | 19168 | Sphingobium japonicum UT26S chromosome 1, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |