Pre_GI: BLASTN Hits

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Query: NC_008593:640000 Clostridium novyi NT, complete genome

Start: 640000, End: 662643, Length: 22644

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014328:40737144073714410040726694Clostridium ljungdahlii ATCC 49587 chromosome, complete genome3e-21111BLASTN svgBLASTP svg
NC_010516:35931035931038266123352Clostridium botulinum B1 str. Okra, complete genome3e-21111BLASTN svgBLASTP svg
NC_016012:879972*87997290262722656Candidatus Arthromitus sp. SFB-rat-Yit, complete genome5e-20107BLASTN svgBLASTP svg
NC_019908:10434011043401106827224872Brachyspira pilosicoli P43/6/78 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_018607:18659721865972188386417893Brachyspira pilosicoli B2904 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012225:47800478008109933300Brachyspira hyodysenteriae WA1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014614:2359046*2359046238727828233Clostridium sticklandii, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_020291:50931385093138512061727480Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2e-0765.9BLASTN svgBLASTP svg
NC_019978:25326402532640255553422895Halobacteroides halobius DSM 5150, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015687:3302372*3302372332181219441Clostridium acetobutylicum DSM 1731 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003030:3301342*3301342332018518844Clostridium acetobutylicum ATCC 824, complete genome7e-0763.9BLASTN svgBLASTP svg