Query: NC_008268:7485710 Rhodococcus sp. RHA1, complete genome
Start: 7485710, End: 7508517, Length: 22808
Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_014814:132404 | 132404 | 154861 | 22458 | Mycobacterium sp. Spyr1 chromosome, complete genome | 1e-76 | 295 | BLASTN svg | BLASTP svg |
| NC_014814:1397429 | 1397429 | 1421567 | 24139 | Mycobacterium sp. Spyr1 chromosome, complete genome | 8e-59 | 236 | BLASTN svg | BLASTP svg |
| NC_013235:4091185 | 4091185 | 4111646 | 20462 | Nakamurella multipartita DSM 44233, complete genome | 5e-48 | 200 | BLASTN svg | BLASTP svg |
| NC_013235:4045589 | 4045589 | 4068148 | 22560 | Nakamurella multipartita DSM 44233, complete genome | 5e-48 | 200 | BLASTN svg | BLASTP svg |
| NC_013235:3812838* | 3812838 | 3841423 | 28586 | Nakamurella multipartita DSM 44233, complete genome | 5e-48 | 200 | BLASTN svg | BLASTP svg |
| NC_013235:1325975 | 1325975 | 1349705 | 23731 | Nakamurella multipartita DSM 44233, complete genome | 5e-48 | 200 | BLASTN svg | BLASTP svg |
| NC_015957:5182460 | 5182460 | 5221284 | 38825 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 1e-26 | 129 | BLASTN svg | BLASTP svg |
| NC_008269:868000 | 868000 | 910599 | 42600 | Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence | 8e-19 | 103 | BLASTN svg | BLASTP svg |
| NC_015312:6398931 | 6398931 | 6417277 | 18347 | Pseudonocardia dioxanivorans CB1190 chromosome, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
| NC_013131:4525075* | 4525075 | 4549127 | 24053 | Catenulispora acidiphila DSM 44928, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
| NC_008269:428898 | 428898 | 452599 | 23702 | Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
| NC_015635:3542125* | 3542125 | 3567953 | 25829 | Microlunatus phosphovorus NM-1, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
| NC_012803:1302261 | 1302261 | 1323804 | 21544 | Micrococcus luteus NCTC 2665, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |