Pre_GI: BLASTN Hits

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Query: NC_008228:3608909 Pseudoalteromonas atlantica T6c, complete genome

Start: 3608909, End: 3627235, Length: 18327

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009092:2902171*2902171293049428324Shewanella loihica PV-4, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008322:29839512983951300671222762Shewanella sp. MR-7, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008321:29220002922000294409922100Shewanella sp. MR-4, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_014541:12808351280835130859927765Ferrimonas balearica DSM 9799 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_014012:33566293356629337459917971Shewanella violacea DSS12, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_008577:31256753125675314666320989Shewanella sp. ANA-3 chromosome 1, complete sequence1e-0765.9BLASTN svgBLASTP svg