Pre_GI: BLASTN Hits

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Query: NC_008148:583030 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 583030, End: 609600, Length: 26571

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008148:24980002498000255085152852Rubrobacter xylanophilus DSM 9941, complete genome01965BLASTN svgBLASTP svg
NC_010551:84695384695386809921147Burkholderia ambifaria MC40-6 chromosome 1, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_011145:49609404960940498025219313Anaeromyxobacter sp. K, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_007963:26449302644930268018935260Chromohalobacter salexigens DSM 3043, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015052:21815142181514221381832305Bifidobacterium longum subsp. infantis 157F, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015067:21360482136048216896932922Bifidobacterium longum subsp. longum JCM 1217, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007760:49111814911181493806026880Anaeromyxobacter dehalogenans 2CP-C, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011961:89181589181591724125427Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_012526:4462*44622702622565Deinococcus deserti VCD115, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009937:53082530827690623825Azorhizobium caulinodans ORS 571, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_011894:63826366382636641559932964Methylobacterium nodulans ORS 2060, complete genome3e-0661.9BLASTN svgBLASTP svg