Pre_GI: BLASTN Hits

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Query: NC_007952:2812996 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 2812996, End: 2836383, Length: 23388

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010676:61098*610988675025653Burkholderia phytofirmans PsJN chromosome 2, complete sequence02950BLASTN svgBLASTP svg
NC_010625:67048267048270099930518Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence01374BLASTN svgBLASTP svg
NC_007952:14530001453000147986226863Burkholderia xenovorans LB400 chromosome 2, complete sequence1e-20109BLASTN svgBLASTP svg
NC_014910:75519275519280336548174Alicycliphilus denitrificans BC chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015376:96500096500098517820179Burkholderia gladioli BSR3 chromosome chromosome 2, complete4e-0867.9BLASTN svgBLASTP svg
NC_020302:22193782219378224609926722Corynebacterium halotolerans YIM 70093 = DSM 44683, complete7e-0763.9BLASTN svgBLASTP svg
NC_007963:81414881414884084326696Chromohalobacter salexigens DSM 3043, complete genome3e-0661.9BLASTN svgBLASTP svg