Query: NC_007952:1587500 Burkholderia xenovorans LB400 chromosome 2, complete sequence
Start: 1587500, End: 1607770, Length: 20271
Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria
General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_007951:1711223 | 1711223 | 1737584 | 26362 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 0 | 6690 | BLASTN svg | BLASTP svg |
NC_007951:3655088* | 3655088 | 3688599 | 33512 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 0 | 6686 | BLASTN svg | BLASTP svg |
NC_008750:450233 | 450233 | 470099 | 19867 | Shewanella sp. W3-18-1, complete genome | 0 | 6346 | BLASTN svg | BLASTP svg |
NC_011901:491783* | 491783 | 520438 | 28656 | Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete | 0 | 6258 | BLASTN svg | BLASTP svg |
NC_010611:240839 | 240839 | 272257 | 31419 | Acinetobacter baumannii ACICU, complete genome | 0 | 5656 | BLASTN svg | BLASTP svg |
NC_010410:3606826 | 3606826 | 3695409 | 88584 | Acinetobacter baumannii AYE, complete genome | 0 | 5656 | BLASTN svg | BLASTP svg |
NC_014836:2919508 | 2919508 | 2943999 | 24492 | Desulfurispirillum indicum S5 chromosome, complete genome | 0 | 4956 | BLASTN svg | BLASTP svg |
NC_007722:2172000 | 2172000 | 2195183 | 23184 | Erythrobacter litoralis HTCC2594, complete genome | 0 | 2436 | BLASTN svg | BLASTP svg |
NC_014836:1606587 | 1606587 | 1624982 | 18396 | Desulfurispirillum indicum S5 chromosome, complete genome | 0 | 1699 | BLASTN svg | BLASTP svg |
NC_015740:2998500 | 2998500 | 3016175 | 17676 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 0 | 999 | BLASTN svg | BLASTP svg |
NC_014366:588347 | 588347 | 610016 | 21670 | Gamma proteobacterium HdN1, complete genome | 1e-75 | 291 | BLASTN svg | BLASTP svg |
NC_007908:1108494 | 1108494 | 1161899 | 53406 | Rhodoferax ferrireducens T118, complete genome | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_009434:3611738* | 3611738 | 3748875 | 137138 | Pseudomonas stutzeri A1501, complete genome | 1e-51 | 212 | BLASTN svg | BLASTP svg |
NC_014815:4621552 | 4621552 | 4663599 | 42048 | Micromonospora sp. L5 chromosome, complete genome | 5e-26 | 127 | BLASTN svg | BLASTP svg |
NC_010552:2131021 | 2131021 | 2149582 | 18562 | Burkholderia ambifaria MC40-6 chromosome 2, complete sequence | 1e-23 | 119 | BLASTN svg | BLASTP svg |
NC_013595:1851226 | 1851226 | 1872653 | 21428 | Streptosporangium roseum DSM 43021, complete genome | 5e-23 | 117 | BLASTN svg | BLASTP svg |
NC_009952:2217877* | 2217877 | 2246619 | 28743 | Dinoroseobacter shibae DFL 12, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_010617:55493 | 55493 | 73691 | 18199 | Kocuria rhizophila DC2201, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_015733:2581324 | 2581324 | 2634334 | 53011 | Pseudomonas putida S16 chromosome, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_010002:2933909 | 2933909 | 2972504 | 38596 | Delftia acidovorans SPH-1, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_008343:88184* | 88184 | 112850 | 24667 | Granulibacter bethesdensis CGDNIH1, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_020064:1611820* | 1611820 | 1635185 | 23366 | Serratia marcescens FGI94, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_013757:3012130 | 3012130 | 3035704 | 23575 | Geodermatophilus obscurus DSM 43160, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_009997:2967521* | 2967521 | 2988992 | 21472 | Shewanella baltica OS195, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_007948:4558000* | 4558000 | 4612122 | 54123 | Polaromonas sp. JS666, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_002928:3781657 | 3781657 | 3800181 | 18525 | Bordetella parapertussis 12822, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_009952:2381601* | 2381601 | 2418247 | 36647 | Dinoroseobacter shibae DFL 12, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010623:188143 | 188143 | 215215 | 27073 | Burkholderia phymatum STM815 chromosome 2, complete sequence | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_016002:2591189 | 2591189 | 2614599 | 23411 | Pseudogulbenkiania sp. NH8B, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_006347:3805500 | 3805500 | 3823099 | 17600 | Bacteroides fragilis YCH46, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012779:2424967* | 2424967 | 2449599 | 24633 | Edwardsiella ictaluri 93-146, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_010512:1015557 | 1015557 | 1045221 | 29665 | Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_008740:3520500* | 3520500 | 3564330 | 43831 | Marinobacter aquaeolei VT8, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_008687:965152 | 965152 | 991888 | 26737 | Paracoccus denitrificans PD1222 chromosome 2, complete sequence | 9e-06 | 60 | BLASTN svg | BLASTP svg |