Pre_GI: BLASTN Hits

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Query: NC_007952:1587500 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 1587500, End: 1607770, Length: 20271

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007951:17112231711223173758426362Burkholderia xenovorans LB400 chromosome 1, complete sequence06690BLASTN svgBLASTP svg
NC_007951:3655088*3655088368859933512Burkholderia xenovorans LB400 chromosome 1, complete sequence06686BLASTN svgBLASTP svg
NC_008750:45023345023347009919867Shewanella sp. W3-18-1, complete genome06346BLASTN svgBLASTP svg
NC_011901:491783*49178352043828656Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete06258BLASTN svgBLASTP svg
NC_010611:24083924083927225731419Acinetobacter baumannii ACICU, complete genome05656BLASTN svgBLASTP svg
NC_010410:36068263606826369540988584Acinetobacter baumannii AYE, complete genome05656BLASTN svgBLASTP svg
NC_014836:29195082919508294399924492Desulfurispirillum indicum S5 chromosome, complete genome04956BLASTN svgBLASTP svg
NC_007722:21720002172000219518323184Erythrobacter litoralis HTCC2594, complete genome02436BLASTN svgBLASTP svg
NC_014836:16065871606587162498218396Desulfurispirillum indicum S5 chromosome, complete genome01699BLASTN svgBLASTP svg
NC_015740:29985002998500301617517676Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete0999BLASTN svgBLASTP svg
NC_014366:58834758834761001621670Gamma proteobacterium HdN1, complete genome1e-75291BLASTN svgBLASTP svg
NC_007908:11084941108494116189953406Rhodoferax ferrireducens T118, complete genome3e-58234BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome1e-51212BLASTN svgBLASTP svg
NC_014815:46215524621552466359942048Micromonospora sp. L5 chromosome, complete genome5e-26127BLASTN svgBLASTP svg
NC_010552:21310212131021214958218562Burkholderia ambifaria MC40-6 chromosome 2, complete sequence1e-23119BLASTN svgBLASTP svg
NC_013595:18512261851226187265321428Streptosporangium roseum DSM 43021, complete genome5e-23117BLASTN svgBLASTP svg
NC_009952:2217877*2217877224661928743Dinoroseobacter shibae DFL 12, complete genome3e-18101BLASTN svgBLASTP svg
NC_010617:55493554937369118199Kocuria rhizophila DC2201, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_015733:25813242581324263433453011Pseudomonas putida S16 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010002:29339092933909297250438596Delftia acidovorans SPH-1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008343:88184*8818411285024667Granulibacter bethesdensis CGDNIH1, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_020064:1611820*1611820163518523366Serratia marcescens FGI94, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013757:30121303012130303570423575Geodermatophilus obscurus DSM 43160, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009997:2967521*2967521298899221472Shewanella baltica OS195, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007948:4558000*4558000461212254123Polaromonas sp. JS666, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002928:37816573781657380018118525Bordetella parapertussis 12822, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009952:2381601*2381601241824736647Dinoroseobacter shibae DFL 12, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010623:18814318814321521527073Burkholderia phymatum STM815 chromosome 2, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_016002:25911892591189261459923411Pseudogulbenkiania sp. NH8B, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_006347:38055003805500382309917600Bacteroides fragilis YCH46, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_012779:2424967*2424967244959924633Edwardsiella ictaluri 93-146, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010512:10155571015557104522129665Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence9e-0660BLASTN svgBLASTP svg
NC_008740:3520500*3520500356433043831Marinobacter aquaeolei VT8, complete genome9e-0660BLASTN svgBLASTP svg
NC_008687:96515296515299188826737Paracoccus denitrificans PD1222 chromosome 2, complete sequence9e-0660BLASTN svgBLASTP svg