Pre_GI: BLASTN Hits

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Query: NC_007333:1559321 Thermobifida fusca YX, complete genome

Start: 1559321, End: 1582522, Length: 23202

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013159:1225866*1225866124823622371Saccharomonospora viridis DSM 43017, complete genome2e-50208BLASTN svgBLASTP svg
NC_009142:39438293943829396903925211Saccharopolyspora erythraea NRRL 2338, complete genome2e-25125BLASTN svgBLASTP svg
NC_008095:7614000*7614000763399619997Myxococcus xanthus DK 1622, complete genome2e-25125BLASTN svgBLASTP svg
NC_015711:22012252201225222038119157Myxococcus fulvus HW-1 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_019673:526000*52600056212836129Saccharothrix espanaensis DSM 44229 complete genome3e-1591.7BLASTN svgBLASTP svg
NC_008699:590000*59000061720127202Nocardioides sp. JS614, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_003888:77062267706226772825922034Streptomyces coelicolor A3(2), complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013172:95377295377297644022669Brachybacterium faecium DSM 4810, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015138:46665444666544468852321980Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_008752:46656994665699468808622388Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-0661.9BLASTN svgBLASTP svg