Pre_GI: BLASTN Hits

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Query: NC_004605:741000 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 741000, End: 761533, Length: 20534

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_005140:66030566030568092320619Vibrio vulnificus YJ016 chromosome II, complete sequence2e-43184BLASTN svgBLASTP svg
NC_004460:816878168710173520049Vibrio vulnificus CMCP6 chromosome II, complete sequence6e-41176BLASTN svgBLASTP svg
NC_012913:16703416703419178024747Aggregatibacter aphrophilus NJ8700, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002940:1065246*1065246108809922854Haemophilus ducreyi 35000HP, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_013416:668152*66815269868530534Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-0661.9BLASTN svgBLASTP svg